3D structure

PDB id
5J3C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S termination complex containing E. coli RF1
Experimental method
X-RAY DIFFRACTION
Resolution
3.04 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
5J3C|1|YA|U|448, 5J3C|1|YA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5J3C_069 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0529
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5J3C|1|YA|C|32
5J3C|1|YA|U|33
5J3C|1|YA|C|34
5J3C|1|YA|G|35
*
5J3C|1|YA|C|445
5J3C|1|YA|G|446
5J3C|1|YA|A|447
5J3C|1|YA|U|448
5J3C|1|YA|A|449
5J3C|1|YA|G|450
5J3C|1|YA|C|451
5J3C|1|YA|G|452
5J3C|1|YA|C|453
5J3C|1|YA|A|454
5J3C|1|YA|C|455
5J3C|1|YA|C|456
5J3C|1|YA|A|457
5J3C|1|YA|G|458
5J3C|1|YA|U|459
5J3C|1|YA|A|460
5J3C|1|YA|C|461
*
5J3C|1|YA|G|468
5J3C|1|YA|G|469
5J3C|1|YA|A|470
5J3C|1|YA|A|471
5J3C|1|YA|A|472
5J3C|1|YA|G|473

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YF
50S ribosomal protein L4
Chain YU
50S ribosomal protein L20
Chain YX
50S ribosomal protein L23

Coloring options:


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