J3_5J4C_043
3D structure
- PDB id
- 5J4C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5J4C|1|1A|G|2843, 5J4C|1|1A|A|2845
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4C_043 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1445
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J4C|1|1A|C|2824
5J4C|1|1A|C|2825
*
5J4C|1|1A|G|2841
5J4C|1|1A|U|2842
5J4C|1|1A|G|2843
5J4C|1|1A|G|2844
5J4C|1|1A|A|2845
5J4C|1|1A|U|2846
*
5J4C|1|1A|A|2892
5J4C|1|1A|A|2893
5J4C|1|1A|U|2894
5J4C|1|1A|C|2895
5J4C|1|1A|G|2896
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
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