J3_5J4D_026
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 5J4D|1|B|G|2833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_026 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1894
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J4D|1|B|C|2814
5J4D|1|B|C|2815
*
5J4D|1|B|G|2831
5J4D|1|B|U|2832
5J4D|1|B|G|2833
5J4D|1|B|G|2834
5J4D|1|B|A|2835
5J4D|1|B|U|2836
*
5J4D|1|B|A|2882
5J4D|1|B|A|2883
5J4D|1|B|U|2884
5J4D|1|B|C|2885
5J4D|1|B|G|2886
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L17
Coloring options: