J3_5J4D_031

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5J4D|1|FB|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J4D_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0592

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

5J4D|1|FB|C|826
5J4D|1|FB|U|827
5J4D|1|FB|A|828
5J4D|1|FB|G|829
*
5J4D|1|FB|C|857
5J4D|1|FB|G|858
5J4D|1|FB|A|859
5J4D|1|FB|A|860
5J4D|1|FB|G|861
*
5J4D|1|FB|C|868
5J4D|1|FB|G|869
5J4D|1|FB|U|870
5J4D|1|FB|U|871
5J4D|1|FB|A|872
5J4D|1|FB|A|873
5J4D|1|FB|G|874

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain PC

30S ribosomal protein S2

Chain VC

30S ribosomal protein S8