J3_5J4D_054
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 5J4D|1|HB|U|14, 5J4D|1|HB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_054 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.103
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
5J4D|1|HB|C|11
5J4D|1|HB|C|12
5J4D|1|HB|A|13
5J4D|1|HB|U|14
5J4D|1|HB|A|15
5J4D|1|HB|G|16
*
5J4D|1|HB|C|68
5J4D|1|HB|G|69
*
5J4D|1|HB|U|107
5J4D|1|HB|C|108
5J4D|1|HB|G|109
Current chains
- Chain HB
- 5S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L25
- Chain CC
- 50S ribosomal protein L27
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain UB
- 50S ribosomal protein L18
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