Motif J3_26985.2 Version J3_26985.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 1-9 | 3-7 | 5-6 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9H3G_027 | 9H3G | 0.2546 | 1 | C3 | 5S rRNA | U | 9 | C | 10 | A | 11 | A | 13 | C | 14 | * | G | 65 | G | 66 | * | U | 109 | G | 110 | cWW | tSs | cWW | cWW |
| 2 | J3_9AXU_026 | 9AXU | 0.0526 | 1 | 3 | 5S rRNA | C | 9 | C | 10 | A | 11 | A | 13 | C | 14 | * | G | 65 | G | 66 | * | U | 109 | G | 110 | cWW | tSs | cWW | cWW |
| 3 | J3_8QYX_024 | 8QYX | 0.0000 | 1 | B2 | 5S rRNA | C | 9 | C | 10 | A | 11 | A | 13 | C | 14 | * | G | 65 | G | 66 | * | U | 109 | G | 110 | cWW | tSs | cWW | cWW |
| 4 | J3_8OI5_025 | 8OI5 | 0.0534 | 1 | 3 | 5S rRNA | C | 9 | C | 10 | A | 11 | A | 13 | U | 14 | * | A | 66 | G | 67 | * | U | 111 | G | 112 | cWW | tSs | cWW | cWW |
| 5 | J3_8P9A_066 | 8P9A | 0.0748 | 1 | AS | 5S rRNA | C | 9 | C | 10 | A | 11 | A | 13 | U | 14 | * | A | 66 | G | 67 | * | U | 111 | G | 112 | cWW | tSs | cWW | cWW |
| 6 | J3_9E6Q_019 | 9E6Q | 0.0739 | 1 | 2 | 5S rRNA | C | 14 | C | 15 | A | 16 | A | 18 | G | 19 | * | C | 71 | G | 72 | * | U | 116 | G | 117 | cWW | tSs | cWW | cWW |
| 7 | J3_1UN6_002 | 1UN6 | 0.1938 | 1 | F | 5S RIBOSOMAL RNA | C | 9 | C | 10 | A | 11 | A | 13 | C | 14 | * | G | 65 | G | 66 | * | U | 109 | G | 110 | cWW | tSs | cWW | cWW |
| 8 | J3_9DFE_020 | 9DFE | 0.3489 | 2 | 1B | 5S rRNA | C | 11 | C | 12 | A | 13 | A | 15 | G | 16 | * | C | 68 | G | 69 | * | U | 108 | G | 110 | cWW | tSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAUAC*GG*UG | 2 |
| CCAUAU*AG*UG | 2 |
| UCAUAC*GG*UG | 1 |
| CCAUAG*CG*UG | 1 |
| CCACAC*GG*UG | 1 |
| CCAUAG*CG*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAUA** | 6 |
| CACA** | 1 |
| CAUA**C | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Heat map statistics
- Min 0.05 | Avg 0.18 | Max 0.43
Coloring options: