J3_5J4D_057
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_057 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1426
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J4D|1|A|C|990
5J4D|1|A|U|991
5J4D|1|A|U|992
5J4D|1|A|G|993
5J4D|1|A|A|994
5J4D|1|A|C|995
5J4D|1|A|A|996
5J4D|1|A|U|997
*
5J4D|1|A|A|1044
5J4D|1|A|C|1045
5J4D|1|A|A|1046
5J4D|1|A|G|1047
*
5J4D|1|A|C|1210
5J4D|1|A|U|1211
5J4D|1|A|U|1212
5J4D|1|A|A|1213
5J4D|1|A|C|1214
5J4D|1|A|G|1215
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain JA
- Peptide chain release factor 1
- Chain WA
- 30S ribosomal protein S14 type Z
Coloring options: