J3_5J4D_072
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5J4D|1|GB|U|448, 5J4D|1|GB|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J4D_072 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0682
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
5J4D|1|GB|C|32
5J4D|1|GB|U|33
5J4D|1|GB|C|34
5J4D|1|GB|G|35
*
5J4D|1|GB|C|445
5J4D|1|GB|G|446
5J4D|1|GB|A|447
5J4D|1|GB|U|448
5J4D|1|GB|A|449
5J4D|1|GB|G|450
5J4D|1|GB|C|451
5J4D|1|GB|G|452
5J4D|1|GB|C|453
5J4D|1|GB|A|454
5J4D|1|GB|C|455
5J4D|1|GB|C|456
5J4D|1|GB|A|457
5J4D|1|GB|G|458
5J4D|1|GB|U|459
5J4D|1|GB|A|460
5J4D|1|GB|C|461
*
5J4D|1|GB|G|468
5J4D|1|GB|G|469
5J4D|1|GB|A|470
5J4D|1|GB|A|471
5J4D|1|GB|A|472
5J4D|1|GB|G|473
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain JC
- 50S ribosomal protein L34
- Chain LB
- 50S ribosomal protein L4
- Chain WB
- 50S ribosomal protein L20
- Chain ZB
- 50S ribosomal protein L23
Coloring options: