J3_5J5B_004

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5J5B|1|AA|U|871, 5J5B|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J5B_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0277

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5J5B|1|AA|C|826
5J5B|1|AA|U|827
5J5B|1|AA|U|828
5J5B|1|AA|G|829
*
5J5B|1|AA|C|857
5J5B|1|AA|G|858
5J5B|1|AA|G|859
5J5B|1|AA|A|860
5J5B|1|AA|G|861
*
5J5B|1|AA|C|868
5J5B|1|AA|G|869
5J5B|1|AA|U|870
5J5B|1|AA|U|871
5J5B|1|AA|A|872
5J5B|1|AA|A|873
5J5B|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21