J3_5J5B_028

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

5J5B|1|CA|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J5B_028 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0582

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5J5B|1|CA|C|1298
5J5B|1|CA|G|1299
5J5B|1|CA|G|1300
5J5B|1|CA|A|1301
5J5B|1|CA|A|1302
5J5B|1|CA|G|1303
*
5J5B|1|CA|C|1625
5J5B|1|CA|A|1626
5J5B|1|CA|G|1627
*
5J5B|1|CA|C|1639
5J5B|1|CA|A|1640
5J5B|1|CA|A|1641
5J5B|1|CA|G|1642

Current chains

Chain CA

23S rRNA

Nearby chains