J3_5J88_010

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5J88|1|AA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J88_010 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.0719

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5J88|1|AA|C|1237
5J88|1|AA|A|1238
5J88|1|AA|A|1239
5J88|1|AA|U|1240
5J88|1|AA|G|1241
*
5J88|1|AA|C|1296
5J88|1|AA|G|1297
5J88|1|AA|U|1298
5J88|1|AA|A|1299
5J88|1|AA|G|1300
5J88|1|AA|U|1301
5J88|1|AA|C|1302
5J88|1|AA|C|1303
*
5J88|1|AA|G|1334
5J88|1|AA|U|1335
5J88|1|AA|C|1336
5J88|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13