J3_5J88_026

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J88_026 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0738

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5J88|1|CA|C|1298
5J88|1|CA|G|1299
5J88|1|CA|G|1300
5J88|1|CA|A|1301
5J88|1|CA|A|1302
5J88|1|CA|G|1303
*
5J88|1|CA|C|1625
5J88|1|CA|A|1626
5J88|1|CA|G|1627
*
5J88|1|CA|C|1639
5J88|1|CA|A|1640
5J88|1|CA|A|1641
5J88|1|CA|G|1642

Current chains

Chain CA

23S rRNA

Nearby chains