J3_5J88_045

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CAUC*GUAU*AUUUAAAG

Length

16 nucleotides

Bulged bases

5J88|1|DA|A|2518, 5J88|1|DA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J88_045 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.271

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5J88|1|DA|C|2517
5J88|1|DA|A|2518
5J88|1|DA|U|2519
5J88|1|DA|C|2520
*
5J88|1|DA|G|2545
5J88|1|DA|U|2546
5J88|1|DA|A|2547
5J88|1|DA|U|2548
*
5J88|1|DA|A|2560
5J88|1|DA|U|2561
5J88|1|DA|U|2562
5J88|1|DA|U|2563
5J88|1|DA|A|2564
5J88|1|DA|A|2565
5J88|1|DA|A|2566
5J88|1|DA|G|2567

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DD

50S ribosomal protein L3

Chain DL

50S ribosomal protein L14