J3_5J88_064

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J88_064 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0827

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J88|1|CA|G|1424
5J88|1|CA|G|1425
5J88|1|CA|G|1426
5J88|1|CA|A|1427
5J88|1|CA|C|1428
5J88|1|CA|G|1429
*
5J88|1|CA|C|1564
5J88|1|CA|C|1565
*
5J88|1|CA|G|1568
5J88|1|CA|A|1569
5J88|1|CA|A|1570
5J88|1|CA|A|1571
5J88|1|CA|A|1572
5J88|1|CA|G|1573
5J88|1|CA|C|1574

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2