J3_5J8A_051

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5J8A|1|AA|C|48, 5J8A|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8A_051 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.032

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5J8A|1|AA|G|46
5J8A|1|AA|C|47
5J8A|1|AA|C|48
5J8A|1|AA|U|49
5J8A|1|AA|A|50
5J8A|1|AA|A|51
5J8A|1|AA|C|52
*
5J8A|1|AA|G|359
5J8A|1|AA|G|360
5J8A|1|AA|G|361
5J8A|1|AA|G|362
5J8A|1|AA|A|363
5J8A|1|AA|A|364
5J8A|1|AA|U|365
5J8A|1|AA|A|366
5J8A|1|AA|U|367
*
5J8A|1|AA|A|393
5J8A|1|AA|G|394
5J8A|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16