J3_5J8A_069
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8A_069 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.0235
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8A|1|DA|G|1424
5J8A|1|DA|G|1425
5J8A|1|DA|G|1426
5J8A|1|DA|A|1427
5J8A|1|DA|C|1428
5J8A|1|DA|G|1429
*
5J8A|1|DA|C|1564
5J8A|1|DA|C|1565
*
5J8A|1|DA|G|1568
5J8A|1|DA|A|1569
5J8A|1|DA|A|1570
5J8A|1|DA|A|1571
5J8A|1|DA|A|1572
5J8A|1|DA|G|1573
5J8A|1|DA|C|1574
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DC
- 50S ribosomal protein L2
Coloring options: