J3_5J8B_004

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5J8B|1|A|G|732, 5J8B|1|A|G|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0341

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5J8B|1|A|C|729
5J8B|1|A|G|730
5J8B|1|A|A|731
5J8B|1|A|G|732
5J8B|1|A|C|733
5J8B|1|A|U|734
5J8B|1|A|A|735
*
5J8B|1|A|U|819
5J8B|1|A|A|820
5J8B|1|A|G|821
*
5J8B|1|A|C|837
5J8B|1|A|G|838
5J8B|1|A|A|839
5J8B|1|A|G|840

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2