J3_5J8B_009

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0652

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5J8B|1|A|G|1389
5J8B|1|A|C|1390
5J8B|1|A|G|1391
5J8B|1|A|G|1392
5J8B|1|A|G|1393
5J8B|1|A|A|1394
5J8B|1|A|C|1395
*
5J8B|1|A|G|1426
5J8B|1|A|G|1427
5J8B|1|A|C|1428
5J8B|1|A|A|1429
5J8B|1|A|G|1430
*
5J8B|1|A|C|1447
5J8B|1|A|C|1448

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L23