J3_5J8B_010

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_010 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0582

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5J8B|1|A|U|2112
5J8B|1|A|U|2113
5J8B|1|A|G|2114
*
5J8B|1|A|C|2217
5J8B|1|A|U|2218
5J8B|1|A|A|2219
5J8B|1|A|A|2220
5J8B|1|A|C|2221
*
5J8B|1|A|G|2234
5J8B|1|A|G|2235
5J8B|1|A|A|2236
5J8B|1|A|C|2237
5J8B|1|A|A|2238
5J8B|1|A|G|2239

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

50S ribosomal protein L2