J3_5J8B_012

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5J8B|1|A|A|2529, 5J8B|1|A|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_012 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0555

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5J8B|1|A|C|2528
5J8B|1|A|A|2529
5J8B|1|A|U|2530
5J8B|1|A|C|2531
*
5J8B|1|A|G|2556
5J8B|1|A|U|2557
5J8B|1|A|U|2558
*
5J8B|1|A|A|2572
5J8B|1|A|U|2573
5J8B|1|A|U|2574
5J8B|1|A|A|2575
5J8B|1|A|A|2576
5J8B|1|A|A|2577
5J8B|1|A|G|2578

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L14