J3_5J8B_013
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- 5J8B|1|A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_013 not in the Motif Atlas
- Homologous match to J3_7RQB_013
- Geometric discrepancy: 0.1156
- The information below is about J3_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24416.1
- Basepair signature
- cWW-F-F-tWH-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5J8B|1|A|C|2801
5J8B|1|A|A|2802
5J8B|1|A|C|2803
*
5J8B|1|A|G|2815
5J8B|1|A|G|2816
5J8B|1|A|U|2817
5J8B|1|A|A|2818
5J8B|1|A|A|2819
5J8B|1|A|G|2820
*
5J8B|1|A|C|2898
5J8B|1|A|G|2899
5J8B|1|A|A|2900
5J8B|1|A|G|2901
5J8B|1|A|G|2902
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L3
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