J3_5J8B_018
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 5J8B|1|a|U|707
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_018 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0891
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|a|U|656
5J8B|1|a|G|657
*
5J8B|1|a|C|701
5J8B|1|a|G|702
5J8B|1|a|C|703
5J8B|1|a|C|704
5J8B|1|a|G|705
5J8B|1|a|A|706
5J8B|1|a|U|707
5J8B|1|a|G|708
5J8B|1|a|G|709
*
5J8B|1|a|C|716
5J8B|1|a|A|717
5J8B|1|a|G|718
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S18
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