J3_5J8B_021
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_021 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0877
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|a|U|921
5J8B|1|a|G|922
5J8B|1|a|G|923
5J8B|1|a|A|924
*
5J8B|1|a|U|1217
5J8B|1|a|A|1218
5J8B|1|a|C|1219
*
5J8B|1|a|G|1319
5J8B|1|a|G|1320
5J8B|1|a|A|1321
5J8B|1|a|A|1322
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain m
- 30S ribosomal protein S13
- Chain u
- 30S ribosomal protein Thx
- Chain x
- Transfer RNA; tRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: