J3_5J8B_031

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

5J8B|1|A|G|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_031 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0574

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5J8B|1|A|C|320
5J8B|1|A|G|321
5J8B|1|A|A|322
5J8B|1|A|A|323
5J8B|1|A|G|324
*
5J8B|1|A|C|339
5J8B|1|A|G|340
5J8B|1|A|C|341
5J8B|1|A|C|342
5J8B|1|A|A|343
5J8B|1|A|G|344
5J8B|1|A|A|345
5J8B|1|A|G|346
5J8B|1|A|A|347
5J8B|1|A|G|348
*
5J8B|1|A|C|360
5J8B|1|A|G|361
5J8B|1|A|U|362
5J8B|1|A|A|363
5J8B|1|A|G|364

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24