J3_5J8B_031
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 5J8B|1|A|G|344
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5J8B_031 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0574
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5J8B|1|A|C|320
5J8B|1|A|G|321
5J8B|1|A|A|322
5J8B|1|A|A|323
5J8B|1|A|G|324
*
5J8B|1|A|C|339
5J8B|1|A|G|340
5J8B|1|A|C|341
5J8B|1|A|C|342
5J8B|1|A|A|343
5J8B|1|A|G|344
5J8B|1|A|A|345
5J8B|1|A|G|346
5J8B|1|A|A|347
5J8B|1|A|G|348
*
5J8B|1|A|C|360
5J8B|1|A|G|361
5J8B|1|A|U|362
5J8B|1|A|A|363
5J8B|1|A|G|364
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L24
Coloring options: