J3_5J8B_032

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5J8B_032 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.076

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J8B|1|A|G|1469
5J8B|1|A|G|1470
5J8B|1|A|G|1471
5J8B|1|A|A|1472
5J8B|1|A|C|1473
5J8B|1|A|G|1474
*
5J8B|1|A|C|1610
5J8B|1|A|C|1611
*
5J8B|1|A|G|1614
5J8B|1|A|A|1615
5J8B|1|A|A|1616
5J8B|1|A|A|1617
5J8B|1|A|A|1618
5J8B|1|A|G|1619
5J8B|1|A|C|1620

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2