3D structure

PDB id
5J91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
5J91|1|BA|U|1240, 5J91|1|BA|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5J91_022 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.0346
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5J91|1|BA|C|1237
5J91|1|BA|A|1238
5J91|1|BA|A|1239
5J91|1|BA|U|1240
5J91|1|BA|G|1241
*
5J91|1|BA|C|1296
5J91|1|BA|G|1297
5J91|1|BA|U|1298
5J91|1|BA|A|1299
5J91|1|BA|G|1300
5J91|1|BA|U|1301
5J91|1|BA|C|1302
5J91|1|BA|C|1303
*
5J91|1|BA|G|1334
5J91|1|BA|U|1335
5J91|1|BA|C|1336
5J91|1|BA|G|1337

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BG
30S ribosomal protein S7
Chain BM
30S ribosomal protein S13

Coloring options:


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