J3_5JC9_004

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5JC9|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0289

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5JC9|1|AA|C|826
5JC9|1|AA|U|827
5JC9|1|AA|U|828
5JC9|1|AA|G|829
*
5JC9|1|AA|C|857
5JC9|1|AA|G|858
5JC9|1|AA|G|859
5JC9|1|AA|A|860
5JC9|1|AA|G|861
*
5JC9|1|AA|C|868
5JC9|1|AA|G|869
5JC9|1|AA|U|870
5JC9|1|AA|U|871
5JC9|1|AA|A|872
5JC9|1|AA|A|873
5JC9|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21