J3_5JC9_011

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5JC9|1|AA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JC9_011 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.042

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5JC9|1|AA|C|1237
5JC9|1|AA|A|1238
5JC9|1|AA|A|1239
5JC9|1|AA|U|1240
5JC9|1|AA|G|1241
*
5JC9|1|AA|C|1296
5JC9|1|AA|G|1297
5JC9|1|AA|U|1298
5JC9|1|AA|A|1299
5JC9|1|AA|G|1300
5JC9|1|AA|U|1301
5JC9|1|AA|C|1302
5JC9|1|AA|C|1303
*
5JC9|1|AA|G|1334
5JC9|1|AA|U|1335
5JC9|1|AA|C|1336
5JC9|1|AA|G|1337

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13