3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
5JC9|1|BA|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5JC9_058 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.0342
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

5JC9|1|BA|C|586
5JC9|1|BA|G|587
5JC9|1|BA|G|588
*
5JC9|1|BA|C|651
5JC9|1|BA|U|652
5JC9|1|BA|U|653
5JC9|1|BA|G|654
5JC9|1|BA|A|655
*
5JC9|1|BA|U|751
5JC9|1|BA|G|752
5JC9|1|BA|A|753
5JC9|1|BA|C|754
5JC9|1|BA|G|755

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BH
30S ribosomal protein S8
Chain BL
30S ribosomal protein S12
Chain BO
30S ribosomal protein S15
Chain BQ
30S ribosomal protein S17

Coloring options:


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