J3_5JTE_003

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

5JTE|1|AA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_003 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1002

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5JTE|1|AA|C|826
5JTE|1|AA|U|827
5JTE|1|AA|U|828
5JTE|1|AA|G|829
*
5JTE|1|AA|C|857
5JTE|1|AA|G|858
5JTE|1|AA|G|859
5JTE|1|AA|A|860
5JTE|1|AA|G|861
*
5JTE|1|AA|C|868
5JTE|1|AA|G|869
5JTE|1|AA|U|870
5JTE|1|AA|U|871
5JTE|1|AA|A|872
5JTE|1|AA|A|873
5JTE|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21