J3_5JTE_017

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_017 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1038

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5JTE|1|BA|C|1298
5JTE|1|BA|G|1299
5JTE|1|BA|G|1300
5JTE|1|BA|A|1301
5JTE|1|BA|A|1302
5JTE|1|BA|G|1303
*
5JTE|1|BA|C|1625
5JTE|1|BA|A|1626
5JTE|1|BA|G|1627
*
5JTE|1|BA|C|1639
5JTE|1|BA|A|1640
5JTE|1|BA|A|1641
5JTE|1|BA|G|1642

Current chains

Chain BA

23S ribosomal RNA

Nearby chains