J3_5JTE_026

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

5JTE|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JTE_026 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.1108

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5JTE|1|AA|G|46
5JTE|1|AA|C|47
5JTE|1|AA|C|48
5JTE|1|AA|U|49
5JTE|1|AA|A|50
5JTE|1|AA|A|51
5JTE|1|AA|C|52
*
5JTE|1|AA|G|359
5JTE|1|AA|G|360
5JTE|1|AA|G|361
5JTE|1|AA|G|362
5JTE|1|AA|A|363
5JTE|1|AA|A|364
5JTE|1|AA|U|365
5JTE|1|AA|A|366
5JTE|1|AA|U|367
*
5JTE|1|AA|A|393
5JTE|1|AA|G|394
5JTE|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16