J3_5JU8_010

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

5JU8|1|AA|U|1240, 5JU8|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JU8_010 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1592

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5JU8|1|AA|C|1237
5JU8|1|AA|A|1238
5JU8|1|AA|A|1239
5JU8|1|AA|U|1240
5JU8|1|AA|G|1241
*
5JU8|1|AA|C|1296
5JU8|1|AA|G|1297
5JU8|1|AA|U|1298
5JU8|1|AA|A|1299
5JU8|1|AA|G|1300
5JU8|1|AA|U|1301
5JU8|1|AA|C|1302
5JU8|1|AA|C|1303
*
5JU8|1|AA|G|1334
5JU8|1|AA|U|1335
5JU8|1|AA|C|1336
5JU8|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13

Chain AY

Transfer RNA; tRNA