J3_5JUO_004
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_004 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.2419
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|A|C|1037
5JUO|1|A|U|1038
5JUO|1|A|A|1039
*
5JUO|1|A|U|1079
5JUO|1|A|U|1080
5JUO|1|A|A|1081
5JUO|1|A|C|1082
5JUO|1|A|G|1083
*
5JUO|1|A|C|1090
5JUO|1|A|A|1091
5JUO|1|A|A|1092
5JUO|1|A|A|1093
5JUO|1|A|G|1094
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain SB
- eS21 (yeast S21)
- Chain TB
- uS8 (yeast S22)
- Chain XA
- uS2 (yeast S0)
- Chain XB
- eS26 (yeast S26)
- Chain YB
- eS27 (yeast S27)
- Chain ZA
- uS5 (yeast S2)
Coloring options: