J3_5JUO_006
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_006 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.4202
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JUO|1|A|U|1168
5JUO|1|A|G|1169
5JUO|1|A|G|1170
5JUO|1|A|A|1171
*
5JUO|1|A|U|1468
5JUO|1|A|A|1469
5JUO|1|A|C|1470
*
5JUO|1|A|G|1574
5JUO|1|A|G|1575
5JUO|1|A|A|1576
5JUO|1|A|A|1577
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain CB
- uS7 (yeast S5)
- Chain EC
- IRES
- Chain NB
- uS9 (yeast S16)
- Chain PB
- uS13 (yeast S18)
- Chain QB
- eS19 (yeast S19)
Coloring options: