J3_5JUO_010
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 5JUO|1|A|A|1321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_010 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.2097
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUO|1|A|U|1293
5JUO|1|A|G|1294
*
5JUO|1|A|U|1303
5JUO|1|A|G|1304
5JUO|1|A|U|1305
5JUO|1|A|C|1306
*
5JUO|1|A|G|1318
5JUO|1|A|A|1319
5JUO|1|A|U|1320
5JUO|1|A|A|1321
5JUO|1|A|A|1322
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain OB
- eS17 (yeast S17)
- Chain XA
- uS2 (yeast S0)
- Chain ZA
- uS5 (yeast S2)
Coloring options: