J3_5JUO_014
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5JUO|1|B|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_014 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1868
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|B|U|502
5JUO|1|B|C|503
*
5JUO|1|B|G|588
5JUO|1|B|A|589
5JUO|1|B|G|590
5JUO|1|B|G|591
5JUO|1|B|A|592
5JUO|1|B|C|593
5JUO|1|B|U|594
5JUO|1|B|G|595
5JUO|1|B|C|596
5JUO|1|B|G|597
*
5JUO|1|B|C|606
5JUO|1|B|A|607
5JUO|1|B|A|608
5JUO|1|B|G|609
5JUO|1|B|G|610
5JUO|1|B|A|611
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain H
- uL4 (yeast L4)
- Chain J
- eL6 (yeast L6)
- Chain JA
- eL32 (yeast L32)
- Chain K
- uL30 (yeast L7)
Coloring options: