J3_5JUO_018
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- 5JUO|1|B|A|1231
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_018 not in the Motif Atlas
- Homologous match to J3_8C3A_005
- Geometric discrepancy: 0.4075
- The information below is about J3_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.3
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUO|1|B|G|1230
5JUO|1|B|A|1231
5JUO|1|B|C|1232
*
5JUO|1|B|G|1256
5JUO|1|B|C|1257
5JUO|1|B|U|1258
5JUO|1|B|A|1259
5JUO|1|B|A|1260
5JUO|1|B|G|1261
5JUO|1|B|G|1262
*
5JUO|1|B|C|1277
5JUO|1|B|A|1278
5JUO|1|B|C|1279
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain P
- uL11 (yeast L12)
- Chain VA
- uL10 (yeast P0)
Coloring options: