J3_5JUO_025
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5JUO|1|B|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_025 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1721
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUO|1|B|C|2664
5JUO|1|B|U|2665
5JUO|1|B|C|2666
*
5JUO|1|B|G|2690
5JUO|1|B|A|2691
5JUO|1|B|A|2692
*
5JUO|1|B|U|2701
5JUO|1|B|A|2702
5JUO|1|B|A|2703
5JUO|1|B|A|2704
5JUO|1|B|A|2705
5JUO|1|B|G|2706
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- uL18 (yeast L5)
- Chain O
- uL5 (yeast L11)
- Chain Y
- eL21 (yeast L21)
Coloring options: