J3_5JUO_040

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUO_040 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.2943

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

5JUO|1|B|A|1654
5JUO|1|B|G|1655
5JUO|1|B|A|1656
5JUO|1|B|C|1657
5JUO|1|B|G|1658
*
5JUO|1|B|C|1791
5JUO|1|B|C|1792
*
5JUO|1|B|G|1796
5JUO|1|B|A|1797
5JUO|1|B|A|1798
5JUO|1|B|A|1799
5JUO|1|B|A|1800
5JUO|1|B|U|1801

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain LA

eL34 (yeast L34)

Chain UA

eL43 (yeast L43)