J3_5JUO_042
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 5JUO|1|B|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUO_042 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.174
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5JUO|1|B|G|2651
5JUO|1|B|U|2652
5JUO|1|B|C|2653
*
5JUO|1|B|G|2754
5JUO|1|B|C|2755
5JUO|1|B|C|2756
5JUO|1|B|U|2757
5JUO|1|B|A|2758
5JUO|1|B|U|2759
5JUO|1|B|C|2760
5JUO|1|B|G|2761
5JUO|1|B|A|2762
5JUO|1|B|U|2763
5JUO|1|B|C|2764
5JUO|1|B|C|2765
*
5JUO|1|B|G|2793
5JUO|1|B|G|2794
5JUO|1|B|U|2795
5JUO|1|B|G|2796
5JUO|1|B|C|2797
5JUO|1|B|C|2798
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain TA
- eL42 (yeast L42)
- Chain V
- eL18 (yeast L18)
- Chain Y
- eL21 (yeast L21)
Coloring options: