J3_5JUP_014
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 5JUP|1|B|U|117, 5JUP|1|B|G|120, 5JUP|1|B|A|121, 5JUP|1|B|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_014 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.1153
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5JUP|1|B|C|113
5JUP|1|B|A|114
5JUP|1|B|A|115
5JUP|1|B|A|116
5JUP|1|B|U|117
5JUP|1|B|U|118
5JUP|1|B|U|119
5JUP|1|B|G|120
5JUP|1|B|A|121
5JUP|1|B|A|122
5JUP|1|B|A|123
*
5JUP|1|B|U|149
5JUP|1|B|A|150
5JUP|1|B|A|151
5JUP|1|B|U|152
5JUP|1|B|U|153
5JUP|1|B|U|154
5JUP|1|B|G|155
5JUP|1|B|G|156
5JUP|1|B|A|157
5JUP|1|B|G|158
*
5JUP|1|B|C|263
5JUP|1|B|G|264
5JUP|1|B|A|265
5JUP|1|B|A|266
5JUP|1|B|G|267
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain L
- eL8 (yeast L8)
- Chain MA
- uL29 (yeast L35)
- Chain NA
- eL36 (yeast L36)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
Coloring options: