J3_5JUP_024
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_024 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1024
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|A|2432
5JUP|1|B|U|2433
5JUP|1|B|U|2434
5JUP|1|B|G|2435
*
5JUP|1|B|C|2512
5JUP|1|B|U|2513
5JUP|1|B|U|2514
5JUP|1|B|A|2515
5JUP|1|B|U|2516
5JUP|1|B|U|2517
*
5JUP|1|B|A|2590
5JUP|1|B|A|2591
5JUP|1|B|G|2592
5JUP|1|B|A|2593
5JUP|1|B|C|2594
5JUP|1|B|A|2595
5JUP|1|B|U|2596
5JUP|1|B|U|2597
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain L
- eL8 (yeast L8)
- Chain NA
- eL36 (yeast L36)
- Chain S
- eL15 (yeast L15)
Coloring options: