J3_5JUP_037
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 5JUP|1|B|U|343, 5JUP|1|B|A|351, 5JUP|1|C|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_037 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0757
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
5JUP|1|B|C|340
5JUP|1|B|G|341
5JUP|1|B|A|342
5JUP|1|B|U|343
5JUP|1|B|A|344
5JUP|1|B|G|345
5JUP|1|B|C|346
5JUP|1|B|G|347
5JUP|1|B|A|348
5JUP|1|B|A|349
5JUP|1|B|C|350
5JUP|1|B|A|351
5JUP|1|B|A|352
5JUP|1|B|G|353
5JUP|1|B|U|354
5JUP|1|B|A|355
5JUP|1|B|C|356
*
5JUP|1|B|G|363
5JUP|1|B|G|364
5JUP|1|B|A|365
5JUP|1|B|A|366
5JUP|1|B|A|367
5JUP|1|B|G|368
*
5JUP|1|C|C|21
5JUP|1|C|U|22
5JUP|1|C|U|23
5JUP|1|C|G|24
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
Coloring options: