J3_5JUP_038
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 5JUP|1|B|A|398, 5JUP|1|B|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUP_038 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0895
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5JUP|1|B|A|369
5JUP|1|B|U|370
5JUP|1|B|G|371
5JUP|1|B|A|372
5JUP|1|B|A|373
5JUP|1|B|A|374
5JUP|1|B|A|375
5JUP|1|B|G|376
5JUP|1|B|A|377
5JUP|1|B|A|378
5JUP|1|B|C|379
*
5JUP|1|B|G|390
5JUP|1|B|A|391
5JUP|1|B|G|392
5JUP|1|B|U|393
5JUP|1|B|G|394
5JUP|1|B|A|395
5JUP|1|B|A|396
5JUP|1|B|A|397
5JUP|1|B|A|398
5JUP|1|B|A|399
5JUP|1|B|G|400
5JUP|1|B|U|401
5JUP|1|B|A|402
5JUP|1|B|C|403
5JUP|1|B|G|404
*
5JUP|1|C|C|19
5JUP|1|C|U|20
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain QA
- eL39 (yeast L39)
- Chain U
- uL22 (yeast L17)
Coloring options: