J3_5JUS_035

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUS_035 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.2297

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

5JUS|1|A|A|760
5JUS|1|A|G|761
5JUS|1|A|A|762
5JUS|1|A|G|763
*
5JUS|1|A|C|773
5JUS|1|A|A|774
5JUS|1|A|G|775
*
5JUS|1|A|U|785
5JUS|1|A|C|786
5JUS|1|A|G|787
5JUS|1|A|A|788
5JUS|1|A|A|789
5JUS|1|A|U|790

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain GB

uS4 (yeast S9)

Chain VB

eS24 (yeast S24)