J3_5JUS_051
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 5JUS|1|D|U|12
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUS_051 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.2182
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5JUS|1|D|C|9
5JUS|1|D|C|10
5JUS|1|D|A|11
5JUS|1|D|U|12
5JUS|1|D|A|13
5JUS|1|D|U|14
*
5JUS|1|D|A|66
5JUS|1|D|G|67
*
5JUS|1|D|U|111
5JUS|1|D|G|112
Current chains
- Chain D
- 5S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- uL18 (yeast L5)
- Chain N
- uL16 (yeast L10)
- Chain Y
- eL21 (yeast L21)
Coloring options: