J3_5JUT_016
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 5JUT|1|B|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUT_016 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1783
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5JUT|1|B|A|828
5JUT|1|B|U|829
5JUT|1|B|A|830
5JUT|1|B|G|831
*
5JUT|1|B|C|863
5JUT|1|B|G|864
5JUT|1|B|U|865
5JUT|1|B|A|866
5JUT|1|B|G|867
*
5JUT|1|B|U|892
5JUT|1|B|C|893
5JUT|1|B|G|894
5JUT|1|B|A|895
5JUT|1|B|A|896
5JUT|1|B|U|897
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain LA
- eL34 (yeast L34)
- Chain UA
- eL43 (yeast L43)
- Chain W
- eL19 (yeast L19)
Coloring options: