J3_5JUT_019

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

5JUT|1|B|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5JUT_019 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.2699

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5JUT|1|B|U|1479
5JUT|1|B|G|1480
5JUT|1|B|A|1481
5JUT|1|B|A|1482
5JUT|1|B|G|1483
5JUT|1|B|U|1484
5JUT|1|B|G|1485
*
5JUT|1|B|C|1857
5JUT|1|B|A|1858
5JUT|1|B|A|1859
*
5JUT|1|B|U|1871
5JUT|1|B|C|1872
5JUT|1|B|U|1873
5JUT|1|B|A|1874

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)

Chain W

eL19 (yeast L19)