J3_5JUT_020
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5JUT_020 not in the Motif Atlas
- Geometric match to J3_4V9F_016
- Geometric discrepancy: 0.2269
- The information below is about J3_4V9F_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5JUT|1|B|U|1526
5JUT|1|B|C|1527
5JUT|1|B|G|1528
5JUT|1|B|A|1529
5JUT|1|B|U|1530
5JUT|1|B|C|1531
*
5JUT|1|B|G|1591
5JUT|1|B|G|1592
5JUT|1|B|A|1593
5JUT|1|B|A|1594
5JUT|1|B|U|1595
*
5JUT|1|B|A|1612
5JUT|1|B|A|1613
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- uL23 (yeast L25)
- Chain LA
- eL34 (yeast L34)
- Chain PA
- eL38 (yeast L38)
- Chain QA
- eL39 (yeast L39)
Coloring options: